ELN Electronic Lab Notebook

Keep expertise where it belongs—your ticket to the AI era

Paperless | Secure | Inheritable | Big Experimental Data | AI Scientist
Request a demo

Why use a electronic lab notebook?

Bedrock
Bedrock
Your Ticket to the AI Era

ELN powers digital transformation in the lab—turning experimental data into the foundation for big data, automation, and AI

70%
70%
Cut time spent on data entry and retrieval

Strengthen management, elevate data quality, and accelerate enterprise data accumulation—building the foundation for AI-driven R&D

100%
100%
Retain expertise, reuse knowledge

Paper lab notebooks are plagued by illegible handwriting, reliance on memory-based recording, and difficult review processes—making it nearly impossible to reuse valuable expertise

AI+
AI+
Fully integrate AI big models

Generate reports, patents, papers, and CTD documents automatically. Design and optimize experiments with AI—empower a Super AI Scientist to help 50 achieve what 100 can

AtomDeep vs traditional electronic lab notebook

Traditional ELN

  • Limited to either chemistry or biology lab capabilities and cannot support both
  • Developed by teams with IT, sales, or manufacturing backgrounds, lacking a deep understanding of scientific research needs
  • Relies heavily on third-party plugins, making troubleshooting and customization difficult
  • Permissions are managed only at the role level, resulting in a lack of fine-grained control
  • Versioning is triggered only by manual action, leaving data vulnerable to loss and making compliance difficult
  • Both on-premise and SaaS cloud deployment are supported, but the SaaS option does not allow data migration
  • Custom-built system with limited configuration flexibility, suited only for a narrow industry segment and difficult to adapt across different fields
  • Does not support upgrades to the latest version or has ceased continuous iteration, meaning the software may become obsolete within five years.

AtomDeep ELN

  • success Supports both chemistry and biology lab capabilities—combining the power of ChemDraw and SnapGene in one platform
  • success Designed and developed by scientists, with a deep understanding of first principles in scientific research
  • success Built with self-developed text editors, spreadsheets, multi-dimensional tables, and other essential components—enabling fast troubleshooting and customization
  • success Granular permissions—configurable at both role and individual user levels
  • success Regular feature updates with responsive technical support
  • success Supports both on-premise and SaaS cloud deployment—with data migration available for both
  • success A no-code platform that meets the experimental recording needs of diverse fields, including small molecule, biologics, cell and gene therapy, synthetic biology, chemical engineering, medical devices, new materials, cosmetics, and more
  • success Supports continuous upgrades—systems deployed a decade ago can be seamlessly upgraded to the latest version overnight without any data loss

Explore AtomDeep ELN features

Stoichiometry analyze

  • Integrates a database of 4 million+ chemicals with essential data such as names and density
  • Supports material calculation by both molar ratio and mass ratio
  • Automatically inserts calculated amounts into experimental procedures
  • Automatically generates overall reaction schemes for multi-step reactions and exports complete experiment reports
Stoichiometry analyze

Design & visualize sequences

  • Visualize and edit plasmid, antibody, and other sequences with automated GC content and melting temperature (Tm) calculation
  • Support for annotating and editing features, primers, restriction sites, and open reading frames (ORFs)
  • Intuitive visualization of alignment results, clearly displaying insertions, deletions, mismatches, and more
Design & visualize sequences

Automatically aggregate critical data

  • Extract and consolidate critical fields from dozens or even hundreds of experiment records
  • Quickly analyze data and generate reports with a single click
  • Meet the need for different report formats based on the same experimental data
  • Automatically deliver reports to relevant stakeholders for seamless collaboration
Automatically aggregate critical data

Full lifecycle instrument management

  • Manage operation, calibration, and maintenance records—fully compliant with GMP requirements for instrument data management
  • Easy-to-use calendar-based scheduling
  • Seamlessly collect data from balances, HPLC, and other instruments
Full lifecycle instrument management

Sample assay

  • Flexible Testing Request Creation: Two ways to create requests—create a new request or generate one directly from an experiment—adapting to different scenarios
  • Automatic Data Mapping: Testing items in a request are automatically synced to the corresponding test experiment, eliminating duplicate entry
  • One‑Click Result Push: Once testing is complete, results can be pushed back to the original request with a single click, forming a closed data loop from request to experiment to results—boosting efficiency
  • LIMS Integration: Seamlessly connects with LIMS to meet diverse requirements
Sample assay

Cross-application connectivity

  • Connects with project management, compound & sample management, instrument management, inventory management, and more
  • Automatically aggregates experiment data by Atomdeep Project
  • Register substances and samples directly from experiment pages, with seamless access to substance and sample data
  • Material usage in experiments automatically deducts from inventory
Cross-application connectivity

Serving over 700 leading global customers

Loved by more than 1 million chemistry and biology scientists from enterprises, universities and research institutions.

01
02
03
04
05
06
07
08
09
10
11
12
13
14
15
16
17Clarins
18Adarx
19Stadison
20Radiant
21Sparx
22
01
02
03
04
05
06
07
08
09
10
11
12
13
14
15
16
17
18
19
20
21
22
01
02
03
04
05
06
07
08
09
10
11
12
13
14
15
16
17
18
19
20
21
22

Why teams choose AtomDeep

Guided by scientists, driven by digital & AI expertise

Guided by scientists, driven by digital & AI expertise

By scientists, for scientists: Designed and shaped by scientists who work directly with customers, we truly understand the needs of researchers in the lab. With over 13 years of dedicated focus on digital and AI solutions for R&D, we help scientists unlock internal and external data—empowering customers to build their own Super AI Scientist.

Global digital & AI consulting expertise: Serving 700+ customers worldwide (including China, the US, Korea, Singapore, France, Germany, Japan, and more) and supporting 100+ publicly listed companies through their digital and AI transformation journeys, we have accumulated extensive best practices from leading global innovators—helping enterprises achieve internationally competitive digital and AI capabilities.

Built on hard tech, driven by AI for science

Built on hard tech, driven by AI for science

Mastering core chemistry technologies: Powered by our self-developed InDraw Office, integrating world-leading AI-powered chemical structure image recognition.

Mastering core biology technologies: Powered by InSequence, our self-developed biological sequence editor, supporting antibody design, gene editing, and protein analysis.

AI that works for scientists: Researchers can use AI to instantly generate professional drafts—weekly and monthly reports, experiment reports, patents, papers, CTD submission documents, and more. With our Bayesian optimization agent, formulation design becomes effortless—no learning curve required.

Flexible and configurable for chemistry, biology, and diverse industries

Flexible and configurable for chemistry, biology, and diverse industries

Fully customizable experiment templates: Supporting text, tables, images, files, chemical structures, biological sequences, comments, and more—our templates adapt to any type of experiment, whether in chemistry or biology. Eliminate repetitive recording and standardize experiment formats quickly.

Zero-code, modular platform: Build like building blocks. Configure workflows and leverage API services to meet personalized needs—all without coding. Ideal for a wide range of R&D fields, including biopharma, chemical engineering, synthetic biology, new materials, new energy, cosmetics, food, medical devices/IVD, agriculture, and more.

Scalable & easy to use: Supports both small labs and enterprise‑level organizations. So intuitive that even beginners can use it with ease.

Self-seveloped technology, fully controlled services

Self-seveloped technology, fully controlled services

All modules—including InDraw, InSequence, InText, InTable, and InForm—are developed entirely in‑house, giving us full control over our services. By eliminating reliance on third‑party software, we can quickly fix bugs and deliver upgrades without constraints. We never use pirated plugins, avoiding intellectual property risks entirely. This enables continuous iteration and optimization, ensuring faster, more responsive support.

Comprehensive security protection

Comprehensive security protection

Achieving ISO27001 international certification, the platform is built on a secure Linux architecture with HTTPS protocols, robust encryption algorithms, local encryption tools, and strictly configured firewalls. It enforces granular permission management, IP access restrictions, and MFA (multi-factor authentication) to ensure every access event is fully traceable. A globally unique “6-second auto-save with modification traceability” feature captures every change, while flexible deployment options—both on-premise and secure SaaS cloud services—are supported. Comprehensive real-time system security monitoring, logging, and multi-layered backup strategies together ensure business continuity, data security, and full recoverability.

Frequently asked questions

A: ELN can fully replace paper lab notebooks and acts as the core of laboratory digitalization and AI transformation.ELN completely puts an end to the inefficiency and risks of paper-based recording, as well as the loss of research insights when personnel leave. It enables second-level data retrieval and seamless real-time team collaboration, freeing researchers from cumbersome administrative work and directly accelerating R&D cycles.ELN serves as a digital compliance engine for laboratories. Through audit trails and electronic signatures, it fundamentally guarantees data integrity, allowing you to easily cope with the world’s most stringent regulatory audits.ELN builds the only reliable data foundation for you: it mandates the generation of standardized and structured data — the essential "high-quality fuel" required for training AI scientists and discovering in-depth research patterns. It converts data assets into actionable insights and innovations, driving genuine data-driven R&D.Therefore, investing in ELN is no longer just a choice to boost efficiency, but a strategic necessity to win the competition in the AI era. When competitors start using data to train AI, clinging to the paper-based era means giving up the future.

700+ global industry leaders, 100+ public companies—powered by AtomDeep ELN

Quick Contact contact@atomdeep.com +86 21 5859 5859 +86 21 5859 0900 Weekdays 9:00-18:00 (UTC+8)