Antibody Innovative Drugs Antibody Innovative Drugs

Data-Driven, AI-Powered:
building a full-process digital solution for innovative drug R&D

Provide self-developed sequence editing and design tools and a unified data foundation, deeply integrating the DeepSeek LLM with a self-developed knowledge graph. Covering every step from sequence design, clone construction, expression and purification, activity analysis, to process development, we help you accelerate the creation of next-generation "super antibodies".

Core capabilities

From design to quality, keep antibody R&D measurable and reproducible.

Core tool adaptation

AtomDeep Sequence editor for visual viewing and editing of biological sequences; incms compound registration and sample management system for sequence registration and data analysis, enabling a closed loop for innovative drug design.
InSequence AtomDeep Registry

Efficient data integration

Through AtomDeep ELN, improve the quality of experimental record data, efficiently integrate information, and quickly analyze structure-activity relationships.
AtomDeep ELN

AI empowers key steps

AtomDeep AI scientific AI large language model assists in experimental design and protocol optimization, automatically generates drafts of papers, patents, and CTD submissions, accelerates decision-making with knowledge bases, and improves work efficiency by 10 to 100 times.
AtomDeep AI

Scenario-based solutions

Target validation and antibody discovery: from intelligent design to high-throughput screening

Challenge: Antibody humanization and affinity maturation design rely heavily on empirical experience; screening data (hybridoma/phage display) is large and complex, and candidate molecules lack systematic management.

Solutions:

  • Intelligent sequence design: With the InSequence biological sequence editor, scientists can visually design and edit antibody heavy and light chain amino acid sequences. Combined with the AtomDeep AI scientific large language model's learning from vast patents and literature, it provides intelligent suggestions for humanization engineering and CDR region optimization, accelerating rational design.
  • Efficient candidate management: From the discovery stage onward, AtomDeep Registry system can assign a unique, traceable ID to each candidate antibody clone, automatically linking it to its gene sequence and source (e.g., hybridoma number), building a clear lineage tree and ensuring data consistency.
Target validation and antibody discovery: from intelligent design to high-throughput screening

Molecular cloning and cell line development: a fully traceable experimental closed loop

Challenge: Records of processes such as plasmid construction, primer design, and sequencing validation are scattered and difficult to trace back; key material information for vectors, cell lines, etc. is isolated, making traceability challenging.

Solutions:

  • End-to-end experimental recording: Within AtomDeep ELN, scientists can use the built-in InSequence tool to perform primer design and sequence alignment, and structurally record data throughout the entire process, ensuring that every experimental step is complete and traceable.
  • Closed-loop management of critical materials: AtomDeep Inventory system supports specialized management of biological materials such as plasmids, cell lines, and enzymes—ensuring that every valuable material has a clear source and traceable history.
  • Full traceability and security: Compliant with NMPA/FDA/EMA electronic record regulations, with 6-second auto-save and modification tracking to ensure data integrity and an auditable trail. Fine-grained permission management protects core intellectual property security.
Molecular cloning and cell line development: a fully traceable experimental closed loop

Expression, purification, and activity characterization: structured data driving decision-making

Challenge: Upstream expression and downstream purification process data are mostly unstructured PDF reports; bioactivity assay data are scattered, making structure-activity relationship (SAR) analysis difficult.

Solutions:

  • Process data normalization: AtomDeep ELN provides standardized templates to systematically record full-process parameters for cell culture, fermentation, chromatography purification, etc., storing data in a structured format to provide a high-quality data foundation for subsequent DOE experimental design and AI-driven process optimization.
  • Closed-loop analysis of activity data: All bioactivity assay results can be linked to specific antibodies in AtomDeep Registry. The platform supports automatic calculation of key parameters such as IC50/EC50 and one-click generation of structure-activity relationship (SAR) visualizations, enabling rapid interpretation of the intrinsic links between molecular structure, expression level, and functional activity, thereby empowering precise molecular optimization.
Expression, purification, and activity characterization: structured data driving decision-making

Project management and CMC submission: global visibility, intelligent compliance

Challenge: Data from antibody drug CMC studies is scattered and complex, making it difficult to monitor project progress and costs in real time; compiling IND submission documents is time-consuming and labor-intensive, creating potential compliance risks.

Solutions:

  • End-to-end project collaboration: AtomDeep Project connects the project task flow from early discovery through process development. Gantt charts track progress in real time, while the system automatically aggregates costs of reagents and consumables consumed in experiments (from Inventory), enabling real-time calculation of R&D costs and moving project management from "rough estimation" to "precise control".
  • AI-powered compliance and submission: Based on the complete experimental records, process data, and characterization reports accumulated in the unified platform, AtomDeep AI ocan quickly assist in generating compliant CMC section descriptions, technical reports, and CTD submission drafts, greatly reducing the documentation burden on scientists while ensuring data chain integrity and auditability, supporting successful IND submissions.
Project management and CMC submission: global visibility, intelligent compliance

Why choose us?

We understand that choosing an R&D platform is not just about selecting software tools; it is about choosing a continuously evolving, living product. More importantly, it is about selecting a strategic partner who understands your business and can support your growth for the next 10 or 20 years. To this end, we have built a unique combination of value.

1.Full-cycle coverage for chemistry and biology laboratories

We provide end-to-end platform solutions that ensure the seamless flow integration of data across every stage—from target discovery, lead optimization, and activity testing to DMPK, CMC, toxicology studies, CTD reporting, IND filing, and clinical bioanalysis. This approach allows you to completely eliminate the data silos and redundant work typically associated with managing multiple disparate systems.

2.Deep AI empowerment, continuous evolution

We deeply integrate electronic lab notebooks, AI large models, and human scientific research knowledge graphs throughout core stages such as molecular design, experiment optimization, and report generation. Through continuous iteration and evolution, we aim to transform data into insights, elevate information into decisions, and truly unlock the intelligent potential of data.

3.Compliance built-In, not an afterthought

From the very beginning, the platform is designed with embedded compliance requirements from major global regulatory agencies such as the FDA and NMPA (e.g., 21 CFR Part11、ALOCA+). This makes compliance and audit trails a natural part of the workflow, significantly reducing regulatory submission risks.

4.Domain-focused professional services, not generic implementation

We provide professional services led by domain experts. Our implementation team not only understands the technology but also has years of in-depth experience in the field of small molecule innovative drug R&D. By leveraging best practices from over 700 clients, we help you quickly get started and plan the optimal implementation path, ensuring the platform perfectly aligns with your R&D workflows.

5.Commitment to continuous success, not one-time delivery

We maintain a dedicated Customer Success team to provide you with ongoing support following the system's launch. This team will proactively assist you in optimizing your workflows, assess your core requirements, continuously iterate on new features, and offer forward-looking recommendations to ensure you consistently maximize the return on your investment.

6.Deep understanding of small molecule innovative drug R&D

Every feature and scenario design is rooted in our profound understanding of this field—specifically its specialized know-how, R&D challenges, working habits, and regulatory landscape. This translates into less need for customization, a superior fit for your operations, and a solution that allows experts in small-molecule innovative drugs to directly address your specific pain points.

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